Description line used in Fasta format


>LLid|GeneOfficialSymbol|Chr|Locus Accession Number|Organism|TaxID|Range|RegionType|seqloc|n|Product

Where RegionType value is: Upstream, 5'UTR, Introns, Exons, 3'UTR or Downstream.
Where seqloc value is: exon/intron CDS-linked , exon/intron non-coding (upstream)
or exon/intron non-coding (downstream)
Where n value is: a consecutive number indicating which exon intron has been extracted.

Example:


>254309|LOC254309|12|NT_035670|Hs|9606|1203400..1203513|Upstream|||peptide.c
TTTACTTGAATCTTTTGGTAGAATTGTATACCATGTGTTCCTGTCTAGGTTTAATCATCAGATGGTGGTC
AAATTGCTCTGCCAGACTGTGTGAACAAAAAAGTGAATGGAAATTTTCGT...

Back to RRE Home Page